PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G15720.1
Common NameF7H2.6, TRFL5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 390aa    MW: 44970.1 Da    PI: 6.0608
Description TRF-like 5
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G15720.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.6e-11340387348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       WT eE   l ++vk++G+  Wk I +  +     R++ ++k++w+++l
      AT1G15720.1 340 FWTSEEVAALREGVKEYGKS-WKDIKNSYPvvfADRSEVDLKDKWRNLL 387
                      5*****************88.**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.629333390IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-11335388IPR009057Homeodomain-like
SuperFamilySSF466897.4E-13335387IPR009057Homeodomain-like
SMARTSM007171.5E-9337389IPR001005SANT/Myb domain
CDDcd116602.89E-16339387No hitNo description
PfamPF002493.7E-9341387IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD  60
EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF MWPVNASDGF FGDALERIWR  120
NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA  180
LLGCSSLESE ARKRFLKRKD SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE  240
PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS  300
EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW  360
KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.481930.0root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425620790.0
Genevisible259487_at0.0
Expression AtlasAT1G15720-
AtGenExpressAT1G15720-
ATTED-IIAT1G15720-
Functional Description ? help Back to Top
Source Description
TAIRArabidopsis thaliana myb family transcription factor (At1g15720)
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G15720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G15720
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273900.0AK227390.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-05-K06.
GenBankAY5195360.0AY519536.1 Arabidopsis thaliana MYB transcription factor (At1g15720) mRNA, complete cds.
GenBankBT0030850.0BT003085.1 Arabidopsis thaliana At1g15720 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7H20.0AC034256.3 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173024.10.0myb family transcription factor TRFL5
TrEMBLQ9LMR20.0Q9LMR2_ARATH; At1g15720
STRINGAT1G15720.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Representative plantOGRP15031424
Publications ? help Back to Top
  1. Karamysheva ZN,Surovtseva YV,Vespa L,Shakirov EV,Shippen DE
    A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis.
    J. Biol. Chem., 2004. 279(46): p. 47799-807
    [PMID:15364931]
  2. Zhang Y,Wu Y,Liu Y,Han B
    Computational identification of 69 retroposons in Arabidopsis.
    Plant Physiol., 2005. 138(2): p. 935-48
    [PMID:15923328]
  3. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]